KEGG T40000: 11027185

Viruses: 11027185

Entry

11027185          CDS       T40000

Symbol

POLY, HCV3_gp1

Name

(RefSeq) Hepatitis C virus genotype 3; polyprotein

K19358

Hepatitis C virus polyprotein

Virus

356114 Hepatitis C virus genotype 3

SSDB

Motif

Pfam:

HCV_NS1 RdRP_3 HCV_env HCV_NS5a_C HCV_NS2 HCV_NS4b Peptidase_S29 HCV_capsid HCV_core HCV_NS5a_1b HCV_NS5a_1a HCV_NS4a HCV_NS5a Flavi_DEAD RdRP_1 ResIII

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

RS:

UniProt:

Structure

Position

NC_009824:340..9405

AA seq 3021 aa
MSTLPKPQRKTKRNTIRRPQDVKFPGGGQIVGGVYVLPRRGPRLGVRATRKTSERSQPRG
RRQPIPKARRSEGRSWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPNDPRRRSRNLG
KVIDTLTCGFADLMGYIPLVGAPVGGVARALAHGVRALEDGINFATGNLPGCSFSIFLLA
LFSCLIHPAASLEWRNTSGLYVLTNDCSNSSIVYEADDVILHTPGCVPCVQDGNTSTCWT
PVTPTVAVRYVGATTASIRSHVDLLVGAATMCSALYVGDMCGAVFLVGQAFTFRPRRHQT
VQTCNCSLYPGHLSGHRMAWDMMMNWSPAVGMVVAHVLRLPQTLFDIMAGAHWGILAGLA
YYSMQGNWAKVAIIMVMFSGVDAHTYTTGGTASRHTQAFAGLFDIGPQQKLQLVNTNGSW
HINSTALNCNESINTGFIAGLFYYHKFNSTGCPQRLSSCKPITFFRQGWGPLTDANITGP
SDDRPYCWHYAPRPCDIVPASSVCGPVYCFTPSPVVVGTTDARGVPTYTWGENEKDVFLL
KSQRPPSGRWFGCSWMNSTGFLKTCGAPPCNIYGGEGNPHNESDLFCPTDCFRKHPETTY
SRCGAGPWLTPRCMVDYPYRLWHYPCTVDFRLFKVRMFVGGFEHRFTAACNWTRGERCDI
EDRDRSEQHPLLHSTTELAILPCSFTPMPALSTGLIHLHQNIVDVQYLYGVGSGMVGWAL
KWEFVILVFLLLADARVCVALWLMLMISQTEAALENLVTLNAVAAAGTHGIGWYLVAFCA
AWYVRGKLVPLVTYSLTGLWSLALLVLLLPQRAYAWSGEDSATLGAGVLVLFGFFTLSPW
YKHWIGRLMWWNQYTICRCESALHVWVPPLLARGSRDGVILLTSLLYPSLIFDITKLLMA
VLGPLYLIQATITTTPYFVRAHVLVRLCMLVRSVIGGKYFQMIILSIGRWFNTYLYDHLA
PMQHWAAAGLKDLAVATEPVIFSPMEIKVITWGADTAACGDILCGLPVSARLGREVLLGP
ADDYREMGWRLLAPITAYAQQTRGLLGTIVTSLTGRDKNVVTGEVQVLSTATQTFLGTTV
GGVIWTVYHGAGSRTLAGAKHPALQMYTNVDQDLVGWPAPPGAKSLEPCACGSSDLYLVT
RDADVIPARRRGDSTASLLSPRPLACLKGSSGGPVMCPSGHVAGIFRAAVCTRGVAKSLQ
FIPVETLSTQARSPSFSDNSTPPAVPQSYQVGYLHAPTGSGKSTKVPAAYVAQGYNVLVL
NPSVAATLGFGSFMSRAYGIDPNIRTGNRTVTTGAKLTYSTYGKFLADGGCSGGAYDVII
CDECHAQDATSILGIGTVLDQAETAGVRLTVLATATPPGSITVPHSNIEEVALGSEGEIP
FYGKAIPIALLKGGRHLIFCHSKKKCDEIASKLRGMGLNAVAYYRGLDVSVIPTTGDVVV
CATDALMTGFTGDFDSVIDCNVAVEQYVDFSLDPTFSIETRTAPQDAVSRSQRRGRTGRG
RLGTYRYVASGERPSGMFDSVVLCECYDAGCSWYDLQPAETTVRLRAYLSTPGLPVCQDH
LDFWESVFTGLTHIDAHFLSQTKQQGLNFSYLTAYQATVCARAQAPPPSWDEMWKCLVRL
KPTLHGPTPLLYRLGPVQNETCLTHPITKYLMACMSADLEVTTSTWVLLGGVLAALAAYC
LSVGCVVIVGHIELEGKPALVPDKEVLYQQYDEMEECSQAAPYIEQAQVIAHQFKEKILG
LLQRATQQQAVIEPIVTTNWQKLEAFWHKHMWNFVSGIQYLAGLSTLPGNPAVASLMAFT
ASVTSPLTTNQTMFFNILGGWVATHLAGPQSSSAFVVSGLAGAAIGGIGLGRVLLDILAG
YGAGVSGALVAFKIMGGECPTAEDMVNLLPAILSPGALVVGVICAAILRRHVGPGEGAVQ
WMNRLIAFASRGNHVSPTHYVPESDAAARVTALLSSLTVTSLLRRLHQWINEDYPSPCSD
DWLRTIWDWVCSVLADFKAWLSAKIMPALPGLPFISCQKGYKGVWRGDGVMSTRCPCGAA
ITGHVKNGSMRLAGPRTCANMWHGTFPINEYTTGPSTPCPSPNYTRALWRVAANSYVEVR
RVGDFHYITGATEDELKCPCQVPAAEFFTEVDGVRLHRYAPPCKPLLRDDITFMVGLHSY
TIGSQLPCEPEPDVSVLTSMLRDPSHITAETAARRLARGSPPSEASSSASQLSAPSLKAT
CQTHRPHPDAELVDANLLWRQEMGSNITRVESETKVVVLDSFEPLRAETDDVEPSVAAEC
FKKPPKYPPALPIWARPDYNPPLLDRWKAPDYVPPTVHGCALPPRGAPPVPPPRRKRTIQ
LDGSNVSAALAALAEKSFPSSKPQEENSSSSGVDTQSSTTSKVPPSPGGESDSESCSSMP
PLEGEPGDPDLSCDSWSTVSDSEEQSVVCCSMSYSWTGALITPCSAEEEKLPISPLSNSL
LRHHNLVYSTSSRSASQRQKKVTFDRLQVLDDHYKTALKEVKERASRVKARMLTIEEACA
LVPPHSARSKFGYSAKDVRSLSSRAINQIRSVWEDLLEDTTTPIPTTIMAKNEVFCVDPA
KGGRKPARLIVYPDLGVRVCEKRALYDVIQKLSIETMGPAYGFQYSPQQRVERLLKMWTS
KKTPLGFSYDTRCFDSTVTEQDIRVEEEIYQCCNLEPEARKVISSLTERLYCGGPMFNSK
GAQCGYRRCRASGVLPTSFGNTITCYIKATAAAKAANLRNPDFLVCGDDLVVVAESDGVD
EDRAALRAFTEAMTRYSAPPGDAPQATYDLELITSCSSNVSVARDDKGRRYYYLTRDATT
PLARAAWETARHTPVNSWLGNIIMYAPTIWVRMVMMTHFFSILQSQEILDRPLDFEMYGA
TYSVTPLDLPAIIERLHGLSAFTLHSYSPVELNRVAGTLRKLGCPPLRAWRHRARAVRAK
LIAQGGKAKICGLYLFNWAVRTKTNLTPLPAAGQLDLSSWFTVGVGGNDIYHSVSRARTR
HLLLCLLLLTVGVGIFLLPAR

NT seq 9066 nt +upstreamnt +downstreamnt
atgagcacacttcctaaacctcaaagaaaaaccaaaagaaacaccatccgtcgcccacag
gacgtcaagttcccgggtggcggacagatcgttggtggagtatacgtgttgccgcgcagg
ggcccacgattgggtgtgcgcgcgacgcgtaaaacttctgaacggtcacagcctcgcgga
cgacgacagcctatccccaaggcgcgtcggagcgaaggccggtcctgggctcagcccggg
tacccttggcccctctatggtaacgagggctgcgggtgggcagggtggctcctgtcccca
cgcggctcccgtccatcctggggcccaaatgacccccggcggaggtcccgcaatttgggt
aaagtcatcgataccctaacgtgcggattcgccgacctcatggggtacatcccgctcgtc
ggcgctcctgtaggaggcgtcgcaagagccctcgcgcatggcgtgagggcccttgaagac
gggataaatttcgcaacagggaacttgcccggttgctccttttctatcttccttcttgct
ctgttctcttgcttaattcatccagcagccagtctagagtggcggaatacgtctggcctc
tacgtccttaccaacgactgttccaatagcagtattgtgtatgaggccgatgatgtcatt
ctgcacacacccggctgtgtaccttgtgtccaggacggcaatacatctacgtgctggacc
ccagtgacacctacagtggcagtcaggtacgtcggagcaactactgcttcgatacgcagt
catgtggacctattagtaggcgcggccacgatgtgctctgcgctctacgtgggtgatatg
tgtggggctgtctttctcgtgggacaagccttcacgttcagacctcgacgccatcaaacg
gtccagacctgtaactgctcgctgtacccaggccatctttcaggacatcgaatggcttgg
gatatgatgatgaattggtcccccgctgtgggtatggtggtggcgcatgtcctgcgttta
ccccagaccttgttcgacataatggccggggcccattggggcatcttggcgggcctggcc
tattactccatgcagggcaactgggccaaggtcgcaatcatcatggttatgttctcaggg
gtcgatgcccacacatataccaccggtggcactgcatctcgtcatacccaagcgtttgct
ggtctttttgacataggcccccaacagaaactgcagctggtcaacaccaatggctcgtgg
cacatcaacagtactgccctaaattgcaatgagtccataaacaccgggtttatagctggg
ttgttttattaccataagttcaactctactggatgtcctcaaaggctcagcagctgcaag
cccatcactttcttcaggcagggatggggccccttaacagatgctaacatcaccggtcct
tctgatgacagaccatactgctggcactacgcacctagaccttgtgacattgtcccggca
tcaagtgtctgcggccctgtgtactgcttcacaccatcgccagtggtcgtaggcactact
gatgccaggggcgtgccaacctacacctggggtgagaatgagaaagatgtgttcctgctg
aagtcccagcggcctcccagtggtcggtggtttgggtgctcgtggatgaactccacgggg
tttctcaagacgtgcggagctcccccctgtaacatctatgggggcgaggggaatccccac
aatgaatcagatcttttctgccccactgactgcttcaggaaacatcccgagaccacgtac
agccggtgtggtgcagggccctggttgacacctcgttgcatggttgactacccataccgg
ctttggcattacccatgtacagtcgatttcagattgttcaaggtgaggatgtttgtgggt
gggtttgaacatcgatttaccgccgcttgcaactggaccaggggggagcgctgcgatatc
gaggatcgtgaccgcagtgagcaacatccgctgctgcattcaacaactgagcttgctata
ctgccttgctctttcacgcccatgcctgcgctgtcaacaggtctgatacacctccaccaa
aacatcgtggatgtccaatacctttatggcgttggatctggcatggtgggatgggcgctg
aaatgggagttcgtcatcctcgttttcctccttctggcggacgcacgcgtgtgcgttgcc
ctttggctgatgctgatgatatcacagacagaagcagccttggagaacctggtcacgctg
aacgccgtcgctgctgctgggacacatggtatcggctggtacctggtagctttttgcgcg
gcgtggtacgtgcggggtaaactcgtcccgctggtgacctacagcctgacgggtctttgg
tccctagcattgctcgtcctcttgctcccccaacgtgcgtatgcttggtcgggtgaagac
agcgccactcttggcgctggggtcttggtcctcttcggcttctttaccttgtcaccctgg
tataagcattggatcggccgcctcatgtggtggaaccagtacaccatatgcagatgcgag
tccgcccttcacgtgtgggttccccccttactcgcacgcgggagtagggatggtgtcatc
ctgctaacaagcctgctttatccatccttaatttttgacatcactaagctgctgatggca
gtattgggcccattatacttaatacaggctaccattactaccaccccctactttgtgcgt
gcgcatgtactggtccgcctttgcatgctcgtgcgctccgtgataggggggaaatacttc
cagatgatcatactgagcattggcagatggttcaacacctacctatacgaccacctagcg
ccaatgcaacactgggccgctgctggtctcaaagacctagcagtggccactgaacctgta
atatttagtcccatggaaatcaaggtcatcacctggggtgcggatacagcggcttgcgga
gatattctttgcgggctgcccgtctctgcacgattaggccgtgaggtgttgttgggacct
gctgatgactatcgggagatgggctggcgtctgttggccccgattacagcatacgcccag
caaactaggggccttcttgggactattgtgactagcttgactggcagagacaagaacgtg
gtgaccggtgaagtgcaggtgctttctacggctacccagaccttcctaggtacaacagta
gggggggttatatggactgtttatcatggagcaggttcgagaacgctcgcgggcgccaaa
catcccgcgctccaaatgtacacaaatgtagatcaggacctcgttgggtggccagcccct
ccaggggccaagtctcttgaaccgtgcgcctgcgggtcttcagacttatacttggttacc
cgcgatgccgatgtcatccctgctcggcgcagaggggactccacagcgagcttgctcagt
cctaggcctctcgcctgtctcaagggttcctctggaggtcccgttatgtgcccttcgggg
catgttgcggggatctttagggctgctgtgtgcaccagaggtgtagcaaaatccctacag
ttcataccagtggaaacccttagcacgcaggctaggtctccatctttctctgacaattca
actcctcctgctgttccacagagctatcaagtaggatacctccatgccccgaccggcagc
ggtaagagcacaaaggtcccggccgcttatgtagcacaaggatataatgtcctcgtacta
aatccatcggtggcggccacattaggcttcggctccttcatgtcgcgtgcctatgggatc
gaccccaacatccgcactgggaaccgcaccgttacaactggtgctaaactgacctattcc
acctacggtaagtttctcgcggacgggggttgctccgggggggcatatgatgtgattatc
tgtgatgaatgtcatgcccaagacgctactagcatattgggtataggcacggtcttagat
caggctgagacggctggggtgaggctgacggttttagcgacagcaactcccccaggcagc
atcactgtgccgcattctaacatcgaagaagtggccctgggctctgaaggtgagatccct
ttctacggtaaggctataccgatagccctgctcaagggggggaggcaccttatcttttgc
cattccaagaaaaaatgtgatgagatagcgtccaaactaagaggcatggggctcaacgct
gtagcatactataggggtctcgatgtgtccgtcataccaacaacaggagacgtcgtagtt
tgcgctactgacgccctcatgactggattcaccggggacttcgattctgtcatagattgc
aacgtggctgttgaacagtacgttgacttcagcctggaccccaccttttccattgagacc
cgcactgctccccaagatgcggtttcccgcagccaacgtcgcggccgaacgggtcgaggt
agactcggtacgtaccgatatgtcgcctccggtgaaagaccgtctggaatgtttgactcg
gtcgtcctctgtgagtgctatgacgcgggctgctcatggtacgatctgcagcccgctgag
accacagttagactgagagcttacttgtccacacccgggttacccgtctgccaagaccat
ttagacttttgggagagcgtcttcactggactaactcacatagatgcccactttctgtca
cagactaagcagcagggacttaacttctcgtacctaactgcctaccaagccactgtgtgc
gcccgcgcgcaggctcctcccccaagttgggacgagatgtggaagtgtctcgtgcggctt
aagccaacactacatggacctacgccccttctatatcggctggggcctgtccaaaatgaa
acctgcttgacacaccccatcacaaaatacctcatggcatgcatgtcagccgatctggaa
gtaaccaccagcacctgggtgttgctcggaggggtcctcgcagccctagcggcctactgc
ttgtcagtcggctgcgttgtgattgtgggtcatattgagctggagggcaagccagcactc
gttccagacaaagaggtgttgtatcaacaatacgatgagatggaggagtgctcacaagct
gccccatatatcgaacaagctcaggtaatagcccaccagttcaaggaaaaaatccttgga
ttgctgcagcgagccacccagcaacaagctgtcattgagcccatagtaactaccaactgg
caaaagcttgaggccttctggcacaagcatatgtggaattttgtgagtgggatccaatac
ctagcaggcctctccactttgcctggcaaccctgctgtggcgtctcttatggcgttcact
gcttcagtcaccagtcccctgacgaccaaccaaactatgttttttaacatactcgggggg
tgggttgccacccatttggcagggccccagagctcctccgcgttcgtggtaagcggcttg
gcaggcgctgccatagggggtataggcctgggcagggtcttgcttgacatcctggcagga
tacggagctggtgtctcaggcgccttggtagcttttaagatcatgggaggagaatgcccc
actgctgaggacatggtcaacctgttgcccgccatactatctccgggtgctctcgtcgtc
ggtgtgatatgcgcagccatactgcgccgacacgtaggacctggggagggagcggtacag
tggatgaacaggctcatcgcgttcgcatcccggggcaaccacgtctcaccgacgcactat
gttcccgagagcgatgctgcggcaagggtcaccgcattgctgagttctctaactgtcaca
agtctgctccggcggttacaccagtggatcaatgaagactacccaagcccttgtagcgac
gattggctacgtaccatctgggactgggtttgctcggtgttggccgacttcaaggcatgg
ctctctgctaagattatgccagcgctccctgggctgcccttcatttcctgtcaaaaggga
tacaagggcgtgtggcggggggacggtgtgatgtcaacacgctgtccttgcggggcagca
ataactggccatgtgaagaacgggtccatgcggcttgcagggccgcgtacatgtgctaac
atgtggcacggtactttccccatcaatgagtacaccaccggacccagcacaccttgccca
tcacccaactacactcgcgcactatggcgcgtggctgccaacagctacgttgaggtgcgt
cgggtgggggacttccattacatcacgggggccacagaagatgagctcaagtgtccgtgc
caagtgccggctgctgagttctttactgaagtggatggagtgagacttcaccgctacgcc
cctccatgtaagcccctgttgagagatgatatcactttcatggtagggttgcattcctac
acgataggatctcaactcccctgtgagccagaaccggatgtctctgtgctgacctcgatg
ttgagagacccttcccatatcaccgccgagacggcagcgcgccgccttgcacgcgggtcc
cctccatcagaggcaagctcatccgccagccaactatcagctccgtcgttgaaggccact
tgccagacgcataggcctcatccagacgctgagctagtggacgccaacttgttatggcgg
caagagatgggcagcaacattacacgggtggagtctgagacaaaggttgtggttcttgat
tcgttcgagcctctgagagccgaaactgatgacgtcgagccctcggtggctgcagagtgt
ttcaagaaacctcccaagtatcctccagcccttcctatctgggctagaccggactacaat
cctccactgttggaccgctggaaagcaccggattatgtaccaccaactgtccatggatgt
gccttaccaccacggggcgctccaccggtgcctccccctcggaggaaaaggacaattcag
ctggacggctctaatgtgtccgcggcgctagccgcgctagctgaaaaatcattcccgtcc
tcgaaaccacaggaagagaatagctcatcctccggggtcgacacacagtccagcactact
tccaaggtgcccccttctccgggaggggagtccgactcagagtcatgctcgtctatgcct
cctctcgagggagagccgggcgacccggacttgagttgcgactcttggtccaccgttagt
gacagcgaggagcagagcgtggtctgctgctctatgtcgtattcttggaccggcgccctg
ataacaccatgtagtgctgaggaagagaaactgcccatcagcccactcagcaactccctg
ttgagacatcataacctagtctattcaacgtcgtctagaagcgcttctcagcgtcagaag
aaggttaccttcgatagactgcaggtgctcgacgaccattacaagactgcattaaaggag
gtaaaggagcgagcgtctagggtaaaggctcgcatgctcaccatcgaggaagcgtgcgcg
ctcgtccctcctcactctgcccgatcgaagttcgggtatagtgcgaaggacgttcgctcc
ttgtccagcagggccattaaccagatccgctccgtctgggaggacttgctggaagacacc
acaactccaattccaaccaccatcatggcgaagaacgaggtgttttgcgtggaccccgct
aaagggggccgcaagcccgctcgcctcattgtgtaccctgacctgggggtgcgtgtctgt
gagaaacgcgccctgtatgacgtgatacagaagttgtcaattgagacgatgggtcctgcc
tatggattccaatactcgcctcaacagcgggtcgaacgtctgctgaagatgtggacctca
aagaaaacccccttggggttctcatatgacacccgctgctttgactcaactgtcactgaa
caggacatcagggtggaagaggagatataccaatgctgtaaccttgaaccggaggccagg
aaagtgatctcctccctcacggagcggctttactgcggaggccctatgttcaacagcaag
ggggcccagtgtggttatcgccgttgccgtgccagtggagttctgcctaccagcttcggc
aacacaatcacttgttacatcaaggccacagcggctgcaaaggccgcaaacctccggaac
ccggactttcttgtctgcggagatgatttggtcgtggtggctgagagtgatggcgtcgat
gaggatagagcagccctgagagccttcacggaggctatgaccaggtattctgctccaccc
ggagatgctccacaggccacttacgaccttgagcttatcacatcttgctcctccaacgtc
tccgtggcacgggacgacaaggggaggaggtactattacctcacccgtgatgccactact
cccctagcccgtgcggcttgggaaacagctcgtcacactccagttaactcctggttaggc
aacatcatcatgtacgcgcctaccatctgggtgcgcatggtgatgatgacacactttttc
tccatactccaatcccaggagatacttgatcgcccccttgactttgaaatgtacggggcc
acttattctgtcactccgctggatttaccagcaatcattgaaagactccatggtctaagc
gcgttcacgctccacagttactctccagtagagctcaatagggtcgcggggacactcagg
aagcttgggtgcccccccctacgggcttggagacatcgggcacgagcagtgcgcgccaag
cttatcgcccagggaggaaaggctaaaatatgcggcctttatctctttaattgggcggta
cgcaccaagaccaacctcactccattgccagccgctggccagttggatttgtccagctgg
tttacggttggtgtcggcgggaacgacatttatcacagcgtgtcgcgtgcccgaacccgc
catttgctgctttgcctactcctactaacagtaggggtaggcatctttctcttgccagct
cgatga

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Genome (1)   
   KEGG GENOME (1)   
Gene (82)   
   KEGG ORTHOLOGY (1)   
   RefGene (79)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
3D Structure (1)   
   PDB (1)   
Protein domain (16)   
   Pfam (16)   
Taxonomy (1)   
   TAX (1)   
All databases (105)   

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